HsaEX0018298 @ hg38
Exon Skipping
Gene
ENSG00000167600 | CYP2S1
Description
cytochrome P450 family 2 subfamily S member 1 [Source:HGNC Symbol;Acc:HGNC:15654]
Coordinates
chr19:41194544-41201372:+
Coord C1 exon
chr19:41194544-41194709
Coord A exon
chr19:41197779-41197928
Coord C2 exon
chr19:41201231-41201372
Length
150 bp
Sequences
Splice sites
3' ss Seq
GAGTCTAGCCTTCTGCGCAGGGG
3' ss Score
1.59
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
CTGAGTAAGAAGTACGGACCGGTGTTCACCATCTACCTGGGACCCTGGCGGCCTGTGGTGGTCCTGGTTGGGCAGGAGGCTGTGCGGGAGGCCCTGGGAGGTCAGGCTGAGGAGTTCAGCGGCCGGGGAACCGTAGCGATGCTGGAAGGGACTTTTGATGGCCATG
Seq A exon
GGGTTTTCTTCTCCAACGGGGAGCGGTGGAGGCAGCTGAGGAAGTTTACCATGCTTGCTCTGCGGGACCTGGGCATGGGGAAGCGAGAAGGCGAGGAGCTGATCCAGGCGGAGGCCCGGTGTCTGGTGGAGACATTCCAGGGGACAGAAG
Seq C2 exon
GAGGAACAAAACCCAGGCACAGAATTCACCAACAAGAACATGCTGATGACAGTCATTTATTTGCTGTTTGCTGGGACGATGACGGTCAGCACCACGGTCGGCTATACCCTCCTGCTCCTGATGAAATACCCTCATGTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167600_MULTIEX1-1/6=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.020 C2=0.314
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.0=100)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=PD(13.5=27.1)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTACGGACCGGTGTTCAC
R:
CGTCATCGTCCCAGCAAACAG
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development