HsaEX0018297 @ hg38
Exon Skipping
Gene
ENSG00000167600 | CYP2S1
Description
cytochrome P450 family 2 subfamily S member 1 [Source:HGNC Symbol;Acc:HGNC:15654]
Coordinates
chr19:41193049-41197928:+
Coord C1 exon
chr19:41193049-41193441
Coord A exon
chr19:41194544-41194709
Coord C2 exon
chr19:41197779-41197928
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCTCCCTACCCCCAGCTG
3' ss Score
9.68
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ACATCCGTTGGAGCATGAGTTCCCGACATCAGGCGGCGGCGGTGGTCCGGGAGAAACCCGGCGGCGGGGAGATAAGCCTGCCCAGGAGGCAGGGGGCTGGGCTAGCTGCCCCGCCCCGCGCCTGACTTCGTTGGGGAGGGAGACGCCCGGCTCCCGCCCCTAACTAGCCCAGCCGCGCGGAGCGCCTGGGAGAGGAGAAGGAGCCGACCTGCCGAGATGGAGGCGACCGGCACCTGGGCGCTGCTGCTGGCGCTGGCGCTGCTCCTGCTGCTGACGCTGGCGCTGTCCGGGACCAGGGCCCGAGGCCACCTGCCCCCCGGGCCCACGCCGCTACCACTGCTGGGAAACCTCCTGCAGCTACGGCCCGGGGCGCTGTATTCAGGGCTCATGCGG
Seq A exon
CTGAGTAAGAAGTACGGACCGGTGTTCACCATCTACCTGGGACCCTGGCGGCCTGTGGTGGTCCTGGTTGGGCAGGAGGCTGTGCGGGAGGCCCTGGGAGGTCAGGCTGAGGAGTTCAGCGGCCGGGGAACCGTAGCGATGCTGGAAGGGACTTTTGATGGCCATG
Seq C2 exon
GGGTTTTCTTCTCCAACGGGGAGCGGTGGAGGCAGCTGAGGAAGTTTACCATGCTTGCTCTGCGGGACCTGGGCATGGGGAAGCGAGAAGGCGAGGAGCTGATCCAGGCGGAGGCCCGGTGTCTGGTGGAGACATTCCAGGGGACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167600-'0-2,'0-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.073 C2=0.020
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=44.1)
A:
PF0006717=p450=FE(12.0=100)
C2:
PF0006717=p450=FE(10.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGAGGAGAAGGAGCC
R:
AAACTTCCTCAGCTGCCTCCA
Band lengths:
255-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development