MmuEX6009163 @ mm9
Exon Skipping
Gene
ENSMUSG00000040703 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1921384]
Coordinates
chr7:26596621-26601672:-
Coord C1 exon
chr7:26601342-26601672
Coord A exon
chr7:26599904-26600069
Coord C2 exon
chr7:26596621-26596770
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTCTCTGCCCCCAGCTA
3' ss Score
10.78
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GAAATAAGGGTGCGGGGAGCGACGCCTTGCAGGAGGCTGCCCCGCCCCACTCCTCTTGATTTCGTTGAGGAGGGAGCCGCCCCGTTCCCTCCCCTAACTAGTCCGGCGGCAAGGAGCTTCTAGGAGGTACAGACCCAGCCGACCTGCAGAGATGGAGGCAGCCAGCACCTGGGCGCTGCTGCTGGCCCTGCTGCTGCTGCTGCTGCTGCTGTCTCTGACGCTATTCAGGACCCCGGCCCGAGGCTACCTACCCCCGGGGCCCACGCCGCTGCCGTTGCTGGGGAACCTCCTGCAGCTGCGTCCCGGGGCTCTGTACTCGGGGCTTTTGCGG
Seq A exon
CTAAGTAAGAAGTATGGGCCTGTGTTCACGGTATACCTGGGCCCCTGGCGCCGCGTGGTGGTCCTGGTTGGACATGATGCTGTAAGAGAAGCCTTGGGAGGTCAGGCTGAGGAATTCAGCGGGCGTGGAACATTGGCAACGCTGGACAAGACCTTTGATGGTCACG
Seq C2 exon
GAGTTTTCTTTGCCAATGGGGAGCGGTGGAAACAGCTGAGGAAATTCACCCTGCTCGCTCTACGGGACCTGGGCATGGGCAAGCGAGAAGGCGAGGAGCTGATCCAGGCGGAGGTGCAGAGTCTGGTGGAGGCTTTCCAGAAGACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040703-'1-3,'1-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
PF0006717=p450=FE(12.0=100)
C2:
PF0006717=p450=PU(27.5=96.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACGCTATTCAGGACCCC
R:
GGAAAGCCTCCACCAGACTCT
Band lengths:
256-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: