MmuEX6009163 @ mm10
Exon Skipping
Gene
ENSMUSG00000040703 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1921384]
Coordinates
chr7:25811602-25816653:-
Coord C1 exon
chr7:25816323-25816653
Coord A exon
chr7:25814885-25815050
Coord C2 exon
chr7:25811602-25811751
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTCTCTGCCCCCAGCTA
3' ss Score
10.78
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GAAATAAGGGTGCGGGGAGCGACGCCTTGCAGGAGGCTGCCCCGCCCCACTCCTCTTGATTTCGTTGAGGAGGGAGCCGCCCCGTTCCCTCCCCTAACTAGTCCGGCGGCAAGGAGCTTCTAGGAGGTACAGACCCAGCCGACCTGCAGAGATGGAGGCAGCCAGCACCTGGGCGCTGCTGCTGGCCCTGCTGCTGCTGCTGCTGCTGCTGTCTCTGACGCTATTCAGGACCCCGGCCCGAGGCTACCTACCCCCGGGGCCCACGCCGCTGCCGTTGCTGGGGAACCTCCTGCAGCTGCGTCCCGGGGCTCTGTACTCGGGGCTTTTGCGG
Seq A exon
CTAAGTAAGAAGTATGGGCCTGTGTTCACGGTATACCTGGGCCCCTGGCGCCGCGTGGTGGTCCTGGTTGGACATGATGCTGTAAGAGAAGCCTTGGGAGGTCAGGCTGAGGAATTCAGCGGGCGTGGAACATTGGCAACGCTGGACAAGACCTTTGATGGTCACG
Seq C2 exon
GAGTTTTCTTTGCCAATGGGGAGCGGTGGAAACAGCTGAGGAAATTCACCCTGCTCGCTCTACGGGACCTGGGCATGGGCAAGCGAGAAGGCGAGGAGCTGATCCAGGCGGAGGTGCAGAGTCTGGTGGAGGCTTTCCAGAAGACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040703-'2-4,'2-2,4-4=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
PF0006717=p450=FE(12.0=100)
C2:
PF0006717=p450=PU(27.8=96.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACGCTATTCAGGACCCC
R:
GGAAAGCCTCCACCAGACTCT
Band lengths:
256-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types