RnoEX0025932 @ rn6
Exon Skipping
Gene
ENSRNOG00000020743 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:RGD Symbol;Acc:1306078]
Coordinates
chr1:82605277-82610350:-
Coord C1 exon
chr1:82610119-82610350
Coord A exon
chr1:82608440-82608605
Coord C2 exon
chr1:82605277-82605426
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTCTCTGCCCCCAGCTA
3' ss Score
10.78
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CTAACTAGTCGGGCCGCGAGGAGCTTCTAGGAGGTGCAGACCCAGCCGACCTGCAGAGATGGAGGCAGCCAGCACCTGGGCGCTGCTGCTGGCCCTGCTGCTGCTGCTGCTGGCTCTGACGCTGCCCAGGACCCCGGCCCGAGGCCAGCTACCCCCGGGGCCCACGCCGCTGCCGTTGCTGGGGAACCTCCTGCAGCTGCGGCCCGGGGCGCTGTACTCGGGGTTCTTACGG
Seq A exon
CTAAGTAAGAAGTATGGGCCTGTGTTCACGGTACACCTGGGCCCCTGGCGCCGCGTGGTGGTCCTGGTTGGACATGATGCTATTCGAGAAGCCCTGGGAGGTCAGGCTGAGGAATTCAGCGGGCGGGGAACGTTGGCAACTCTGGACAAGACCTTTGATGGTCACG
Seq C2 exon
GAGTTTTCTTTGCCAATGGGGAGCGGTGGAAACAGCTGAGGAAATTCACCCTGCTGGCTCTACGGGACCTGGGCATGGGCAAGCGAGAGGGCGAGGAGCTGATCCAGGAGGAGGTGCAGAATCTGGTGAAGGCTTTCCAGCGGACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020743_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=44.8)
A:
PF0006717=p450=FE(12.0=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCTTCTAGGAGGTGCAG
R:
TTTCCTCAGCTGTTTCCACCG
Band lengths:
258-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]