BtaEX0010596 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012972 | CYP2U1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20582]
Coordinates
chr6:18515633-18519902:-
Coord C1 exon
chr6:18519267-18519902
Coord A exon
chr6:18517347-18517508
Coord C2 exon
chr6:18515633-18515800
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTGTATAGAAA
3' ss Score
8.34
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AATGCAAAAGCACGGAGACGCCCCTTTCAATCCTTTCCCCATTGTCAACAACGCCGTCTCTAACATCATCTGCTCCTTGTGCTTTGGTCGGCGCTTTGATTACACTAATAGTGAATTTAAGCAAATGCTTAATTTTATGTCACGAGCATTAGAAGTTTGTCTGAACACCCAGCTCCTCCTGGTCAACATATGCTCCTGGCTTTATTACCTTCCTTTTGGACCATTTAAGGAATTAAGACAGATTGAAAAGGATTTAACCCTTTTCCTTAAAAAAATCATCAAAGATCATCGAGAGTCTTTGGATGTAGAGAACCCTCAGGACTTCATAGACATGTATCTTCTCCATGTGGAGGAGGAGAAGAAAAATAACAGCAATAGTGGGTTTGATGAAGATTACTTATTTTACATCATCGGCGATCTCTTCATTGCTGGCACTGATACCACAACTAACTCTTTGCTTTGGTGCCTCCTGTATATGTCACTGCACCCCAACATTCAAG
Seq A exon
AAAAGATTCATGAAGAAATTGCAAGGGTCATTGGTGCTGACCGCGCCCCCTCCCTCACTGACAAGGCGCAGATGCCCTACACAGAAGCCACCATCATGGAGGTGCAGAGGCTGAGCACTGTGGTGCCGCTCTCCATCCCTCACATGACCTCAGAGAAAACAG
Seq C2 exon
TGCTCCAAGGTTTTACCATTCCTAAAGGCACAATAATATTACCCAACCTATGGTCAGTACACAGAGACCCAGCCATCTGGGAGAAACCAAATGATTTCTACCCTGATCGATTTCTGGATGATCAAGGACAACTTATTAAAAAGGAAACGTTTATTCCTTTTGGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012972-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(47.3=100)
A:
PF0006717=p450=FE(12.1=100)
C2:
PF0006717=p450=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGTGGAGGAGGAGAAGA
R:
TTGGTTTCTCCCAGATGGCTG
Band lengths:
249-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development