DreEX0025465 @ danRer10
Exon Skipping
Gene
ENSDARG00000026548 | cyp2u1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-070730-1]
Coordinates
chr1:49282247-49286378:-
Coord C1 exon
chr1:49285725-49286378
Coord A exon
chr1:49283032-49283193
Coord C2 exon
chr1:49282247-49282414
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTAATGACCCCTAGAGA
3' ss Score
6.19
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GACAGCAGGCCCTTCTGGCATTGATCTGACTCCGCTCATCAGCAATGCGGTCTCCAACATCATCTCCTTAATGAGTCTGGGTCAGCGCTTCCACCATGAGGACAAGGAGTTTCGAAACATGCGGGATCTCATGTCCCACGGCCTGGAGATCAGCGTCAACACCTCCATTCTGCTGGTCAATGTGTTCCCCTGGCTCTACTATCTGCCATTCGGTGTCTTCAAGGAGCTGCGACGAGCCGAGCTTGACATTACAGCCTTCCTGAAGAGGATCATCGCGAGGCACCGAGCCACACTGGATCCGGAGAATCCCAGGGACTTCATCGATATGTATCTGGTGGAGATGCTGGCCAAGCAGAAAGAAGGCAGTTCAGAGGAAAACCTGTTCTCCGAGGATGATCTCTTCTACATTATTGGAGATCTCTTCATTGCAGGAACCGACACGACGACTAATAGCATGCTGTGGAGCATTCTCTATATGTCTTTGTATCCTGATGTGCAAG
Seq A exon
AGAAGGTTCAGAAGGAGATTGATGCAGTGGTGGGATCTGAGAGAGTGCCCTCTCTGACCGATAAGAGCAGTTTGCCGTACACTGAAGCCACTATTATGGAGGTGATAAGAATGACTGTTGTGGTTCCTCTGTCCATACCACATATGGCCTCAGAAACCACCG
Seq C2 exon
AGTTCAGAGGGTTCACCATCCCTAAAGGAACGGTTATCATCCCAAACCTCTGGTCAGTTCACAGGGATCCCACAGTGTGGGAAAATCCTGATGACTTCAATCCATCACGATTTCTAGATGACCAGGGAAAGATTCTCAGGAAAGACTGCTTTATTCCATTTGGATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026548_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(48.8=100)
A:
PF0006717=p450=FE(12.1=100)
C2:
PF0006717=p450=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCTGGTGGAGATGCTGGC
R:
ACACTGTGGGATCCCTGTGAA
Band lengths:
251-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]