RnoEX0025937 @ rn6
Exon Skipping
Gene
ENSRNOG00000011053 | Cyp2u1
Description
cytochrome P450, family 2, subfamily u, polypeptide 1 [Source:RGD Symbol;Acc:1309433]
Coordinates
chr2:236418753-236426628:-
Coord C1 exon
chr2:236425993-236426628
Coord A exon
chr2:236420604-236420765
Coord C2 exon
chr2:236418753-236418920
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCCTTTCTGCATAGAAA
3' ss Score
8.42
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GATGCAGAAGCACGGGGAGGCCCCCTTCAGCCCCTTCCCAGTCATCAGCAATGCCGTCTCCAACATCATCTGCTCCCTGTGCTTCGGCCAGCGCTTCGACTACACCAACAAGGAGTTTAAAAAGGTGCTGGACTTCATGTCTCGAGGGCTAGAAATCTGCTTGCACAGCCAGCTCTTCCTGATCAACCTATGTCCCTGGTTTTACTACCTTCCCTTTGGGCCGTTTAAGGAACTGAGGCAAATCGAAAGGGACATAACCTGCTTCCTTAAAAACATCATCAAAGAGCACCAAGAGTCTCTGGATGCCAACAACCCCCAGGACTTCATAGACATGTACCTTCTGCACACGCAGGAGGAGAAGGACAAGTGCAAGGGCACCAACTTCGATGAGGACTACCTGTTCTACATCATCGGGGACCTCTTCATCGCGGGCACGGACACCACAACCAACTCTTTGCTCTGGTGCCTGCTGTACATGTCACTGAACCCCGGCGTGCAAA
Seq A exon
AAAAGGTTCATGAAGAAATTGAAAGGGTCATTGGCCGTGACCGTGCACCTTCCCTCACAGACAAGGCCCAGATGCCATACACAGAAGCCACCATCATGGAGGTACAGCGGTTATCCATGGTGGTACCACTTGCCATTCCTCACATGACCTCGGAGAAAACAG
Seq C2 exon
TCCTCCAAGGGTACAGTATTCCTAAAGGCACAGTGGTCCTACCCAATTTGTGGTCCATACACAGAGACCCAGTCATTTGGGAGAAGCCAGACGACTTCTGTCCTCATCGATTTCTGGATGACCAGGGACAACTTTTGAAAAGAGAAACGTTTATCCCTTTTGGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011053-'3-4,'3-1,8-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(46.2=100)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAAGAGTCTCTGGATGC
R:
AGGACCACTGTGCCTTTAGGA
Band lengths:
255-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]