Special

MmuEX0013361 @ mm9

Exon Skipping

Gene
ENSMUSG00000027983 | Cyp2u1
Description
cytochrome P450, family 2, subfamily u, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1918769]
Coordinates
chr3:130996435-131000974:-
Coord C1 exon
chr3:131000704-131000974
Coord A exon
chr3:130998306-130998467
Coord C2 exon
chr3:130996435-130996602
Length
162 bp
Sequences
Splice sites
3' ss Seq
ATTCTTCCCTTCCTGCACAGAAA
3' ss Score
8.84
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GAGCTAAGGCAAATCGAAAGGGACATATCCTGCTTCCTGAAAAACATCATCCGAGAGCATCAAGAGTCTCTGGATGCCAGCAACCCTCAGGACTTCATAGACATGTACCTTCTGCACATGGAGGAAGAGCAGGGAGCCAGCAGGCGCAGCAGCTTCGACGAGGACTACCTGTTCTACATCATTGGGGACCTCTTCATCGCCGGCACTGACACCACGACCAACTCTCTGCTCTGGTGCCTGCTGTACATGTCACTGAACCCCGACGTGCAAA
Seq A exon
AAAAGGTTCATGAAGAAATTGAAAGGGTCATTGGCTGTGACCGTGCACCTTCCCTCACGGACAAGGCCCAGATGCCATACACAGAGGCCACCATCATGGAGGTGCAGCGGCTGTCCATGGTGGTGCCGCTCGCCATTCCTCACATGACCTCGGAGAAAACAG
Seq C2 exon
TCCTCCAAGGGTTCACCATTCCCAAAGGCACAGTGGTCCTAATCAACCTGTGGTCAGTACACAGAGACCCAGCCATCTGGGAGAAGCCAGACGACTTCTGTCCTCATCGATTTCTGGATGACCAAGGACAACTTTTGAAAAGAGAAACTTTTATTCCTTTTGGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027983-'2-3,'2-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006717=p450=PD(5.1=9.9),PF0006717=p450=FE(58.4=100)

							
A:
PF0006717=p450=FE(34.4=100)

							
C2:
PF0006717=p450=FE(12.2=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000101944





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000087717
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr4:107947376-107947537 
ALTERNATIVE
HsaEX6085739
(CYP2U1)
Human
(hg19)
chr4:108868532-108868693 
HIGH PSI
HsaEX6085739
(CYP2U1)
Rat
(rn6)
chr2:236420604-236420765 
HIGH PSI
RnoEX0025937
(Cyp2u1)
Cow
(bosTau6)
chr6:18517347-18517508 
HIGH PSI
BtaEX0010596
(CYP2U1)
Chicken
(galGal4)
chr4:37412243-37412404 
HIGH PSI
GgaEX7003797
(CYP2U1)
Chicken
(galGal3)
chr4:39319045-39319206 
Zebrafish
(danRer10)
chr1:49283093-49283193 
ALTERNATIVE
DreEX0025465
(cyp2u1)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACATGGAGGAAGAGCAGGGAG

				
R: 
AGAAGTCGTCTGGCTTCTCCC

				
Band lengths: 
255-417

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"