BtaEX0011368 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147877172-147888662:+
Coord C1 exon
chr1:147877172-147877243
Coord A exon
chr1:147883681-147883800
Coord C2 exon
chr1:147888543-147888662
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTGAAACTGTTTCAGGAG
3' ss Score
7.35
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGACATCACTCAAAAAGGATATGAAAAGAAAAGGGCAAAGCTGCTTGCACGCTGCGTACCCCTCATTCAAG
Seq A exon
GAGTAGACCCCTCCCTGCAAGTGGAGAATAGCATCCTTGGGCCCGCACAAGCCTCGGCCCCCGCGCCCAAGCAGCCCAAGCCGCGGCCCAGCAACGCCCGGGACGAGCGCTTCCGGTCAG
Seq C2 exon
ATGTTCACACCGAGGCCGTGCAGGCAGCTTTGGCCAAACACAAAGAGAGGAAGATGCCCATGCCATCCAAGAGGCGCTCTGTCCTCACGCACGCATCTGTGGAGGCCTACACACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=0.878 C2=1.000
Domain overlap (PFAM):
C1:
PF051207=GvpG=FE(51.1=100),PF064646=DMAP_binding=FE(20.9=100)
A:
PF051207=GvpG=PD(0.1=0.0),PF064646=DMAP_binding=FE(34.8=100)
C2:
PF064646=DMAP_binding=PD(24.3=68.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATCACTCAAAAAGGATATGA
R:
GGTGTGTAGGCCTCCACAGAT
Band lengths:
187-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development