MmuEX0014701 @ mm10
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76319467-76327773:-
Coord C1 exon
chr10:76327702-76327773
Coord A exon
chr10:76321490-76321606
Coord C2 exon
chr10:76319467-76319586
Length
117 bp
Sequences
Splice sites
3' ss Seq
GGTATAAAAATGTGTTTCAGGAG
3' ss Score
4.28
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGACATCACTCAGAAAGGATATGAGAAGAAGAGGGCGAAGCTGCTGGCTCGGTACATCCCCCTCATTCAAG
Seq A exon
GAGTAGACCCATGTCTGCAGACAGAGAATAGAATTCCCGGGCCCTTGCTGACGGCAGCTACCGCTAAACCACAGAAGTCTCGGGCTACCAACTCCAGGGATGAGCGCTTCCGGTCAG
Seq C2 exon
ATGTTCACACGGAAGCCGTGCAAGCAGCTTTGGCCAAGTACAAGGAGAGGAAGATGCCCATGCCTTCAAAGAGACGCTCCGCCCTTGTGCACTCCTCCGTTGAGACCTACACGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231_CASSETTE9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.775 C2=0.864
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(51.1=100),PF051207=GvpG=FE(44.4=100),PF064646=DMAP_binding=PU(12.1=16.0)
A:
PF064646=DMAP_binding=FE(34.2=100),PF051207=GvpG=PD(0.1=0.0)
C2:
PF064646=DMAP_binding=PD(0.1=0.0),PF051207=GvpG=PD(14.8=19.5),PF064646=DMAP_binding=PD(84.8=68.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATCACTCAGAAAGGATATGA
R:
CTGGAGGCGTGTAGGTCTCAA
Band lengths:
192-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types