DreEX6034597 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:627954-636859:-
Coord C1 exon
chr9:636788-636859
Coord A exon
chr9:629407-629526
Coord C2 exon
chr9:627954-628073
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTGTGTGTGTGCAGGTG
3' ss Score
10.98
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
Exon sequences
Seq C1 exon
GTGACATCACGCAGAAAGGCTATGAGAAGAAAAGAGGGAAATTACTGGCGCCCTACATTCCCCAGATACAAG
Seq A exon
GTGTAGATCCGTCTCTTCAGATCGATCACAGGATTCAGTCTTCAGCACCGGCGGCTCATCCGGCCTCCAAACACAACAAACCTCGGCTGGCCAACTCCAGGGATGAGCGCTTCAGATCAG
Seq C2 exon
ATCTTCATACAGAAGCAGTTCAAGCAGCTTTGGCCAAATATAAAGAGAGAAAGATGCCGATGCCCTCAAAGAGACGCTCTGTGCTGGTGCAGTCTTCAGTCGAAGCATGCACTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'4-2,'4-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=0.902 C2=0.878
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(20.9=100),PF051207=GvpG=PD(47.6=80.0)
A:
PF064646=DMAP_binding=FE(34.8=100)
C2:
PF064646=DMAP_binding=PD(24.3=68.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATCACGCAGAAAGGCT
R:
GGAGTGCATGCTTCGACTGAA
Band lengths:
187-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]