GgaEX0008883 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6956265-6991538:-
Coord C1 exon
chr7:6991467-6991538
Coord A exon
chr7:6962097-6962216
Coord C2 exon
chr7:6956265-6956384
Length
120 bp
Sequences
Splice sites
3' ss Seq
AAGTAAAACTCTTATTTCAGGTG
3' ss Score
5.28
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GTGATATCACTCAGAAAGGCTATGAAAAGAAAAGAGCAAAGCTGTTAGCACGTTACATACCACTAATTCAAG
Seq A exon
GTGTGGATCCATCCCTGCAAGCAGAAAACAGAGTCCCAGGCACCTCACAAGCCACTGCTGTTGTGTCTAAACAGCAGAAATCGCATTCCACAAACTCAAGGGATGAGCGTTTCCGATCTG
Seq C2 exon
ATGTCCACACTGAAGCAGTTCAGGCAGCTCTTGCAAAATACAAAGAGAGAAAAATGCCTATGCCTTCAAAGAGACGGTCTGTTCTTGTGCACTCTTCAGTAGAAACATACACACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'4-8,'4-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF064646=DMAP_binding=PU(57.4=97.5)
C2:
PF064646=DMAP_binding=PD(41.2=68.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCAGAAAGGCTATGAAAAGA
R:
CTGGAGGTGTGTATGTTTCTACTGA
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]