BtaEX0011372 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29385313-29387300:-
Coord C1 exon
chr5:29387173-29387300
Coord A exon
chr5:29385813-29385947
Coord C2 exon
chr5:29385313-29385427
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCTTCACCACCCTGCTCCAGGCA
3' ss Score
4.91
5' ss Seq
CAGGTCTCT
5' ss Score
1.07
Exon sequences
Seq C1 exon
GGCAGCTTGGTGTTTGTGGTTGGGAAAATGGATGGGTTACTGATGGTTAGTGGTCGAAGACATAATGCTGATGACATTGTTGCTACTGGACTGGCTGTTGAGTCAATAAAGACTGTTTACAGAGGAAG
Seq A exon
GCACACTGGCCTTCTTGCTGTTCCTCAAACCTGCCAAGCTCGTTCCTACCTCAGAACCTTTTCGCTTTCCGTTCCTTCTGCCCGGAAACCTCTTCCTCCAGATCTCGGCGTGGCTCGCGTCCTCACCTCATTCAG
Seq C2 exon
AATTGCTGTGTTTTCTGTGTCTGTATTTTATGATGAGCGCATCGTGGTGGTTGCAGAACAAAGACCCGACGCTTCCGAGGAAGATAGTTTCCAGTGGATGAGCCGTGTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-'25-26,'25-25,26-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000006902fB2154
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTTGGTGTTTGTGGTTG
R:
CACGGCTCATCCACTGGAAAC
Band lengths:
234-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development