RnoEX0027957 @ rn6
Exon Skipping
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141846970-141848846:+
Coord C1 exon
chr7:141846970-141847097
Coord A exon
chr7:141848213-141848347
Coord C2 exon
chr7:141848732-141848846
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCTTCACCACTCTGCTCCAGGCA
3' ss Score
5.26
5' ss Seq
CAGGTCTCT
5' ss Score
1.07
Exon sequences
Seq C1 exon
GGTAGCTTGGTGTTTGTGGTTGGAAAAATGGATGGATTGCTCATGGTCAGCGGCCGAAGACACAACGCTGACGACATTGTCGCTACTGGATTGGCTGTGGAGTCGATAAAGACGGTCTATCGGGGGAG
Seq A exon
GCACACTGGCCTTCTCGCTGTTCCTCAAACCTGCCAAGCTCGTCCCCACCTCAGAACCTTTCCGCTTTCCGCTCCTTCTGCCCGGAATCCTCTTCCTCCAGATCTTCGCGTGGCTCGTGTCCTCACCTCATTCAG
Seq C2 exon
AATTGCTGTGTTTTCTGTGTCTGTGTTTTATGACGAGCGCATTGTGGTGGTGGCAGAACAAAGGCCCGATGCGTCTGAGGAAGACAGCTTCCAGTGGATGAGCCGAGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000086577fB4176
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGGTGTTTGTGGTTGGA
R:
CACTCGGCTCATCCACTGGAA
Band lengths:
234-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]