HsaEX1011617 @ hg38
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
disco interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr12:50706538-50708562:+
Coord C1 exon
chr12:50706538-50706665
Coord A exon
chr12:50707914-50708048
Coord C2 exon
chr12:50708448-50708562
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCTTCACCACTTTGCTCCAGGCA
3' ss Score
5.18
5' ss Seq
CAGGTCTCT
5' ss Score
1.07
Exon sequences
Seq C1 exon
GGTAGTTTGGTGTTCGTGGTTGGGAAAATGGATGGCTTACTGATGGTTAGTGGTCGAAGACATAATGCTGATGACATTGTTGCTACTGGATTGGCTGTAGAATCAATAAAGACTGTTTATAGAGGAAG
Seq A exon
GCACACTGGCCTTCTTGCTGTTCCTCAAACCTGCCAAGCTCGTCCCTACCTCAGAACCTTTTCGCTTTCCGTTCCTTCTGCCCGGAAACCTCTTCCTCCAGATCTTCGCGTGGCTCGCGTCCTCACCTCATTCAG
Seq C2 exon
AATTGCTGTGTTTTCTGTGTCTGTATTTTATGATGAGCGCATTGTGGTGGTTGCGGAACAAAGACCTGATGCTTCTGAGGAAGATAGTTTCCAGTGGATGAGCCGCGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-'48-54,'48-53,49-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000301180fB13811
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGGTGTTCGTGGTTGGG
R:
CACGCGGCTCATCCACTG
Band lengths:
234-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains