MmuEX0014704 @ mm9
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100011740-100013552:+
Coord C1 exon
chr15:100011740-100011867
Coord A exon
chr15:100012944-100013078
Coord C2 exon
chr15:100013438-100013552
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCTTCACCACTCTGCTCCAGGCA
3' ss Score
5.26
5' ss Seq
CAGGTCTCT
5' ss Score
1.07
Exon sequences
Seq C1 exon
GGTAGCTTGGTGTTCGTGGTTGGAAAAATGGATGGATTACTCATGGTCAGCGGCCGAAGACATAACGCCGATGACATTGTTGCTACTGGATTGGCTGTGGAGTCCATAAAGACCGTCTATCGAGGAAG
Seq A exon
GCACACTGGCCTTCTCGCTGTTCCTCAAACCTGCCAAGCTCGTCCCTACCTCAGAACCTTCCCGCTTTCCGTTCCTTCTGTCCGGAATCCTCTTCCTCCAGATCTTCGCGTGGCTCGCGTCCTCACCTCCTTCAG
Seq C2 exon
AATTGCTGTGTTTTCTGTGTCTGTGTTTTATGACGAGCGCATTGTGGTGGTGGCAGAACAAAGGCCCGATGCGTCTGAGGAAGACAGTTTCCAGTGGATGAGCCGGGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-'26-24,'26-23,27-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGCTTGGTGTTCGTGGTT
R:
CCGGCTCATCCACTGGAAAC
Band lengths:
234-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: