BtaEX0011556 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54060739-54065917:-
Coord C1 exon
chr17:54065696-54065917
Coord A exon
chr17:54065352-54065499
Coord C2 exon
chr17:54060739-54061018
Length
148 bp
Sequences
Splice sites
3' ss Seq
CCTGTCGCTGTCCCTTCCAGGTG
3' ss Score
12.57
5' ss Seq
CGGGTACGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTGGCTGAACGATTTGGATGAGCTGATGCACCGGCGGGTGAAGTTGCTGGGCGACTGCCTGCTGTGCGCAGCCTTCCTGAGCTATGAGGGCGCCTTCACGTGGGAATTCCGGGATGAGATGGTCAACCAGGTATGGCAGAACGACATCCTGGAGCGGGGGATACCCCTGAGCCAGCCCTTCCGACTGGAGAACCTGCTCACAGACGACGTGGAGATCAGCAG
Seq A exon
GTGGGGCTCCCAGGGGCTGCCCCCTGACGAGCTCTCGGTTCAGAACGGCATCCTCACCACCCGGGCCAGCCGCTTCCCCCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATAAAGAGAAAAGAGGAGAAGAACAACCTGCGG
Seq C2 exon
GTGGCATCCTTTAATGACCCCGACTTCCTCAAGCAGCTGGAAATGTCCATAAAGTATGGGACCCCCTTCCTGTTCCACGATGTGGATGAGTACATCGACCCTGTGATTGACAATGTCTTAGAAAAAAACATCAAGGTCTCCCAAGGACGGCAGTTTATCATTCTGGGAGACAAGGAAGTGGACTATGATTCGAATTTCAGACTGTATCTGAACACCAAGCTGGCCAACCCCAGATACAGCCCTTCCGTGTTTGGGAAAGCCATGGTGATCAATTATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
A:
PF127812=AAA_9=FE(21.2=100)
C2:
PF127812=AAA_9=FE(40.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGACGACGTGGAGATCA
R:
GGCCAGCTTGGTGTTCAGATA
Band lengths:
250-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development