GgaEX7009164 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4866149-4867577:-
Coord C1 exon
chr15:4867356-4867577
Coord A exon
chr15:4866638-4866785
Coord C2 exon
chr15:4866149-4866428
Length
148 bp
Sequences
Splice sites
3' ss Seq
GCTTGGTCTTTGCTTCCTAGGTG
3' ss Score
8.81
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTGGGCAAAGGAACTAGAGGAGCTCAAAATGCGAAAGGTGAAGTTGCTTGGAGATTGTCTACTCTGTGCTGCCTTTCTGAGCTATGAAGGAGCATTCAGCTGGGAGTTTCGTAATGAGATGATTTATCAAGTGTGGCAAGAAGACATTCTTTCACGAGAGATTCCTCTCAGCCAGCCTTTTAGGTTAGAAAGCCTCCTGACTAATGAGGTGGAGGTTAGCAG
Seq A exon
GTGGGTTTCTCAAGGATTGCCTCCAGATGAGCTCTCCGTCCAAAATGGCATTCTGACAACATATGCAAGCCGCTTCCCACTCTGTATTGACCCACAACAACAGGCTTTAAATTGGATTAAGAAGAAAGAAGAAAAAAATAACCTGAGG
Seq C2 exon
GTGTCTTCCTTTAATGACCCAGATTTCCTTAAACAACTGGAACTTGCCATAAAGTATGGAAGTCCCTTCTTGCTGCATGGTGTTGATGAATACATTGATCCTGTGATAGACAATGTCTTAGAGAAGAATATCAAAGTTGCACAAGGGCGAAAATTCATTGTCCTGGGTGACAAAGAGGTTGACTATGACAGTAACTTTAGATTGTACCTGAACACCAAATTAGCAAACCCAAAGTATTCTCCCGCTGTATTTGGGAAAGCTATGGTTATCAATTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'73-79,'73-78,74-79=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(70.0=65.3),PF127812=AAA_9=PU(3.9=12.0)
A:
PF127812=AAA_9=FE(21.2=100)
C2:
PF127812=AAA_9=FE(40.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCCTCTCAGCCAGCCTT
R:
ACCTCTTTGTCACCCAGGACA
Band lengths:
243-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]