DreEX6011101 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27761646-27762464:+
Coord C1 exon
chr5:27761646-27761867
Coord A exon
chr5:27761947-27762094
Coord C2 exon
chr5:27762185-27762464
Length
148 bp
Sequences
Splice sites
3' ss Seq
AGGAACAAAAATTCTCGTAGATG
3' ss Score
0.89
5' ss Seq
AAGGTTTAA
5' ss Score
1.88
Exon sequences
Seq C1 exon
CTGGATAAAGGACCTGGAGGAGCTGAAGCAGCGGCGAGTGCGTCTTCTGGGAGACTGTCTAATCTGCGCTGCCTTCCTCAGCTATGAAGGAGCCTTCAGCTGGGACTTCCGTAACGAAATGGTGTATAAGGTATGGCAGGCAGACGTCCTGGAAAGAGGCATTCCTCTGAGCCAGCCTTTCCGAATAGAAAACCTGCTCACTGATGAGGTGGAGATCAGCAG
Seq A exon
ATGGGGATCTGAAGGTCTCCCTCCAGATGAGCTCTCAGTGCAGAACGGCATCCTGACTACCAGATCTAGCCGCTTCCCCTTGTGCATTGACCCCCAGCAGCAAGCGCTTAACTGGGTCAAAAAAAAGGAGGAGAAGAACAATCTGAAG
Seq C2 exon
ATCTCATCATTCAATGATCCAGACTTCTTGAAGGGGTTGGAGTTGGCTATTAAGTATGGATTCCCCTTCCTCTTCCAAGATGTGGATGAATATATCGATCCCGTAATTGACAACGTTCTTGAGAAGAATATAAAAGGGGCAGAGGGGCGCCAGGTTGTCGTACTTGGTGATAAGGAAGTTGACTACGATCCCAACTTCAAACTTTACCTCAATACCAAACTTGCAAACCCAAAGTTCTTACCTGCAGTATTTGGGAAGGCTATGGTTATCAATTACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'66-64,'66-63,67-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
A:
PF127812=AAA_9=FE(21.2=100)
C2:
PF127812=AAA_9=FE(40.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTGGAAAGAGGCATTCC
R:
CACCAAGTACGACAACCTGGC
Band lengths:
247-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]