MmuEX6021050 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124817560-124819410:+
Coord C1 exon
chr5:124817560-124817781
Coord A exon
chr5:124817989-124818136
Coord C2 exon
chr5:124819131-124819410
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTTGTGGTTGTTCCTCGCAGGTG
3' ss Score
9.49
5' ss Seq
CGGGTGCAG
5' ss Score
-0.19
Exon sequences
Seq C1 exon
GTGGCTGAACGACCTGGATGAGCTAATGCACCGGCGGGTGAAGCTGCTAGGCGACTGCTTGCTCTGTGCGGCCTTCTTGAGCTACGAGGGCGCCTTTACCTGGGAGTTTCGTGATGAGATGGTCAACCAGGTGTGGCAGAACGACATCTTGGATCGCGACATCCCCCTGAGCCAGCCTTTCCGACTGGAGAACCTCCTCACAGATGATGTTGAGATTAGCAG
Seq A exon
GTGGGGCTCCCAGGGCCTTCCCCCCGATGAGCTCTCGGTTCAGAATGGCATCCTTACAACCCGGGCCAGTCGCTTCCCACTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAACGAAAAGAGGAGAAGAATAACCTACGG
Seq C2 exon
GTTGCTTCCTTCAATGACCCCGACTTCCTGAAGCAGCTCGAGATGTCCATAAAGTATGGGACCCCCTTCCTGTTCCACGACGTGGATGAGTACATCGACCCTGTGATTGACAGCGTCCTGGAGAAGAACATCAAGACCTCCCAAGGCCGCCAGTTCATCATTCTGGGGGACAAGGAGGTTGACTATGACTCGAATTTCCGGCTGTACCTCAATACCAAGCTGGCCAATCCTAGATACTCCCCATCGGTGTTTGGGAAGGCCATGGTCATCAACTATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'73-73,'73-72,74-73
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
A:
PF127812=AAA_9=FE(21.2=100)
C2:
PF127812=AAA_9=FE(40.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGACATCTTGGATCGCGAC
R:
CCCCCAGAATGATGAACTGGC
Band lengths:
252-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types