BtaEX0011583 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28074084-28075543:+
Coord C1 exon
chr19:28074084-28074187
Coord A exon
chr19:28075164-28075320
Coord C2 exon
chr19:28075461-28075543
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCTTTTGTCCCCGGCTACAGGCA
3' ss Score
7.63
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
GACCGAAACTGGGAAATTATTGAAACCACTCGCTCCAAAATAGAGCAGTTCAAGAGGACCATGCCGCTCATCTCGGACCTGCGAAACCCTGCCCTTCGAGAGCG
Seq A exon
GCACTGGGATCAGGTCAGGGATGAGGTCCAACGTGAGTTTGATCAGGAATCAGAAAGCTTCACCTTGGAGCAGATCGTGGAGCTTGGGATGGATCAGCATGTAGAGAAAATTGGGGAGATCTCTGCCTCAGCCACCAAAGAGCTGGCTATAGAACTG
Seq C2 exon
GCGTTACAGAACATTGCCAAGACCTGGGATGTGATTCAGCTTGACATAGTGCCCTACAAGGATAAGGGCCATCACCGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'23-25,'23-24,24-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.2=100)
A:
PF083938=DHC_N2=FE(12.5=100)
C2:
PF083938=DHC_N2=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGAAACTGGGAAATTATTGA
R:
TGAGTCGGTGATGGCCCTTAT
Band lengths:
186-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development