HsaEX6020681 @ hg19
Exon Skipping
Gene
ENSG00000183914 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:2948]
Coordinates
chr17:7671482-7673957:+
Coord C1 exon
chr17:7671482-7671585
Coord A exon
chr17:7673570-7673726
Coord C2 exon
chr17:7673875-7673957
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCTCCTGTTCCTGGCTGCAGGCA
3' ss Score
8.96
5' ss Seq
GTGGTACGA
5' ss Score
5.95
Exon sequences
Seq C1 exon
GACCGAAACTGGGAAATTATTGAAACCACTCGCTCAAAAATAGAGCAGTTCAAGAGGACCATGCCTCTCATCTCAGACCTGCGGAACCCTGCCCTTAGAGAGAG
Seq A exon
GCACTGGGACCAGGTCCGGGATGAGATCCAGCGGGAGTTTGATCAGGAATCTGAAAGCTTCACCTTGGAGCAGATTGTGGAGCTTGGGATGGATCAGCATGTGGAGAAAATTGGGGAGATCTCTGCTTCAGCAACTAAAGAGCTGGCTATAGAAGTG
Seq C2 exon
GCTTTACAAAACATTGCCAAGACCTGGGATGTGACTCAGCTCGACATAGTACCCTACAAGGATAAGGGCCATCATCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.2=100)
A:
PF083938=DHC_N2=FE(12.5=100)
C2:
PF083938=DHC_N2=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAAACTGGGAAATTATTGAAACC
R:
CCGATGATGGCCCTTATCCTTG
Band lengths:
181-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)