MmuEX0014984 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69297486-69300564:-
Coord C1 exon
chr11:69300461-69300564
Coord A exon
chr11:69297695-69297851
Coord C2 exon
chr11:69297486-69297568
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTTCCTGTTCTGGGCCGCAGGCA
3' ss Score
8.93
5' ss Seq
GTGGTATGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
GACCGAAACTGGGAAATCATTGAAACGACTCGCTCCAAAATAGAGCAGTTCAAGAGGACCATGCCCCTCATCTCAGACCTGCGGAATCCAGCCCTCAGAGAGAG
Seq A exon
GCACTGGGACCAGGTCAAAGAGGAAGTCCAGCGGGAGTTTGATCAGGAGTCAGAGAGCTTCACCTTGGAGCAGATTGTGAAACTAGGGATGGATCAGCACGTGGAGAAGATTGCAGAGATCTCAGCCTCTGCGACCAAAGAGCTGGCCATAGAAGTG
Seq C2 exon
GGATTACAAAATATTGCCAAGACCTGGGATTCGACTCAGCTAGACATAGTACCCTACAAGGACAAGGGCCATCACCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'31-30,'31-29,32-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.2=100)
A:
PF083938=DHC_N2=FE(12.5=100)
C2:
PF083938=DHC_N2=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGAAACTGGGAAATCATTGA
R:
GTGATGGCCCTTGTCCTTGTA
Band lengths:
179-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: