RnoEX6048014 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56091100-56094814:-
Coord C1 exon
chr10:56094711-56094814
Coord A exon
chr10:56091319-56091475
Coord C2 exon
chr10:56091100-56091182
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTGTTCTGGCTGCAGGCA
3' ss Score
8.99
5' ss Seq
GTGGTAGGA
5' ss Score
4.71
Exon sequences
Seq C1 exon
GACCGAAATTGGGAAGTCATTGAAACGACTCGCGCCAAAATAGAGCAGTTCAAGAGGACCATGCCGCTCATCTCTGATCTGCGGAACCCAGCCCTCAGAGAACG
Seq A exon
GCACTGGGACCAGGTCAAAGAGGAAATCCAGAGGGAGTTTGATCAGGAGTCAGAAAGCTTCACCTTGGAGCAGATTGTGAAACTAGGGATGGATCAGCATGTGGAGAAAATCGCGGAGATCTCAGCCTCTGCAACCAAGGAGCTGGCCATAGAAGTG
Seq C2 exon
GGATTACAAAACATTGCCAAAACCTGGGATTCGACTCAGCTAGACATAGTACCCTACAAGGACAAGGGCCATCACCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'35-35,'35-34,37-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(32.4=100)
A:
PF083938=DHC_N2=FE(12.5=100)
C2:
PF083938=DHC_N2=FE(6.5=100)
Main Skipping Isoform:
ENSRNOT00000090809fB4258
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGAAATTGGGAAGTCATTGA
R:
GTGATGGCCCTTGTCCTTGTA
Band lengths:
179-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]