DreEX0003656 @ danRer10
Exon Skipping
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21156287-21176945:+
Coord C1 exon
chr7:21156287-21156390
Coord A exon
chr7:21163088-21163244
Coord C2 exon
chr7:21176863-21176945
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGTGGATCTGTTTATTTTAGACA
3' ss Score
6.81
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GACAAACACTGGGAGATTGTGGACTCCTCTAAGAGCAGGATTGAGCAGTTTAAGAAGATCATCCCACTGATCACAGATCTTAGGAATTCAGCCTTGAGAGAGAG
Seq A exon
ACACTGGAATCAAATAAGACAAGAGGTACAGCAGACGTTTGACCCGAGTAGTGCAGACTTCACTCTGGAGAAGATTGTGGCTTTGGGTCTGGACCACCATGCTGAGAGTATCAGTGACATTTCAGGAGCGGCCAGCAAAGAGCTCTCCATAGAACAG
Seq C2 exon
ACGCTGGAAGGCATCATGAAGACATGGAAGGAAATGTCCCTGGACATCACACCCCACAAAGACAAAGGTCACCACAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352-'24-27,'24-26,25-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.107
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.2=100)
A:
PF083938=DHC_N2=FE(12.5=100)
C2:
PF083938=DHC_N2=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAACACTGGGAGATTGTGGA
R:
TCAGTTTGTGGTGACCTTTGTCT
Band lengths:
186-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]