BtaEX0011605 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59493914-59509103:+
Coord C1 exon
chr20:59493914-59494096
Coord A exon
chr20:59507760-59508003
Coord C2 exon
chr20:59508989-59509103
Length
244 bp
Sequences
Splice sites
3' ss Seq
ATATTTATGCAAATTAACAGGAA
3' ss Score
4.45
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GTGAAAGTCGGTGACAAAGAAATAGATGTGATGGATGGCTTCAGACTCTACATCACCACCAAGCTGCCCAATCCAGCCTATACCCCTGAAATAAGTGCTCGGACCTCCATCATTGACTTCACAGTCACTATGAAAGGTCTCGAGGACCAGTTACTGGGGAGAGTCATTCTCACAGAGAAGCAG
Seq A exon
GAATTGGAGAAAGAAAGAACTCATCTCATGGAAGATGTAACTGCAAACAAAAGGAAGATGAAGGAGCTGGAAGATAATTTGCTTTACCGTCTAACCAGCACTCAGGGGTCCCTGGTGGAAGACGAGAGTCTCATCCTTGTGTTGAGTAAGACAAAAAAGACAGCTGAGGAGGTGACACAGAAGCTGGAAATTTCAGCTGAGACGGAAATTCAAATTAACTCAGCCCGGGAGGAATATAGACCCG
Seq C2 exon
TTGCCACCCGGGGTAGCATCCTCTACTTTCTCATCACGGAGATGCGCTTGGTTAATGAGATGTATCAGACTTCGCTCCGCCAGTTTCTTGGCTTGTTTGACCTTTCCTTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'67-67,'67-66,68-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.146 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(26.0=100)
A:
PF127812=AAA_9=PD(25.1=70.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAGTCGGTGACAAAGAAA
R:
TGGCCAAGGAAAGGTCAAACA
Band lengths:
297-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development