MmuEX6053032 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28341261-28350834:+
Coord C1 exon
chr15:28341261-28341443
Coord A exon
chr15:28349515-28349758
Coord C2 exon
chr15:28350720-28350834
Length
244 bp
Sequences
Splice sites
3' ss Seq
ATGTTCATGTAAATTAAAAGGAA
3' ss Score
3.4
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTGAAGGTTGGAGACAAGGAAGTGGATGTCATGGACGGCTTTAAACTTTATATCACTACCAAACTGCCGAATCCAGCCTATACCCCAGAAATAAGTGCTCGGACCTCCATCATCGACTTCACTGTCACCGTGAAGGGCCTGGAGGACCAGCTACTGGGGAGAGTCATTCTCACGGAGAAGCAG
Seq A exon
GAACTGGAGAAAGAACGAACTCATCTCTTGGAGGATGTAACTGCAAACAAAAGAAGGATGAAGGAGCTAGAAGATAATTTGCTTTACCGCCTGACAAGCACTCAAGGGTCTCTGGTGGAAGATGAGAGTCTCATCATTGTGCTGAGCAACACCAAAAAGACAGCTGAGGAGGTGACACAGAAGCTAGAAATTTCTGGAGAGACAGAAATTCAAATTAACTCAGCCCGGGAGGAATACCGACCTG
Seq C2 exon
TTGCTACACGGGGCAGCATCCTCTACTTCCTGATCACGGAGATGCGCTTGGTTAATGAGATGTATCAGACTTCGCTCCGTCAGTTTCTGGGCTTGTTTGACCTTTCCTTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'64-65,'64-64,65-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(26.0=100)
A:
PF127812=AAA_9=PD(25.1=70.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACAAGGAAGTGGATGTCA
R:
AAGGAAAGGTCAAACAAGCCCA
Band lengths:
284-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: