DreEX6039487 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9324829-9334295:+
Coord C1 exon
chr16:9324829-9325011
Coord A exon
chr16:9333142-9333385
Coord C2 exon
chr16:9334181-9334295
Length
244 bp
Sequences
Splice sites
3' ss Seq
CATATGCTTTGGATTGTCAGGAA
3' ss Score
3.97
5' ss Seq
CCGGTAGAT
5' ss Score
4.44
Exon sequences
Seq C1 exon
GTGAAAATCGGGGATAAAGAAGTGGACGTAATGAAGGGCTTCCGTCTCTATGTGACCACTAAGCTGCCCAACCCTGCTTACACTCCTGAGATCAGTGCACGGACATCCATTATTGACTTTACAGTGACGATGAGGGGCCTGGAAGATCAGCTACTGGGCAGAGTTATTCTCACTGAGAAACAG
Seq A exon
GAACTGGAAAAGGAGCGGACTGACTTGCTAGAGGATGTAACTGCTAATAAGCGTAAGATGAAGGAACTGGAGGATAATCTACTTTTTCGGCTGACCAGCACGCAGGGCTCCCTGGTGGATGACGAAAGTCTCATCACAGTTCTGGGAAATACCAAACGCACTGCGGAGGAGGTCACACAGAAACTTCAAATCGCTGCCGAGACTGAGATCCAGATCAATGCAGCTCGAGAGGAATACAGGCCCG
Seq C2 exon
TTGCCACAAGAGGAAGCATCTTATACTTTCTGATCACCGAGATGAGCATGGTGAACGTGATGTACCAAACCTCTCTACGGCAGTTCTTGGGCTTGTTTGATTTGTCCTTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(26.0=100),PF123243=HTH_15=PU(2.6=3.3)
A:
PF127812=AAA_9=PD(25.1=70.7),PF123243=HTH_15=PD(94.8=89.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCGGGGATAAAGAAGTGGACG
R:
GGTCAAGGACAAATCAAACAAGCC
Band lengths:
292-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]