GgaEX6020562 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78590201-78601402:+
Coord C1 exon
chr2:78590201-78590383
Coord A exon
chr2:78595692-78595935
Coord C2 exon
chr2:78601288-78601402
Length
244 bp
Sequences
Splice sites
3' ss Seq
ATTACCATGTATTTCAACAGGAA
3' ss Score
8.58
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGAAAGTTGGTGACAAAGAAGTAGATGTGATGAATGGCTTCAGACTTTACATTACCACAAAACTGCCAAATCCAGGTTACTCTCCTGAAATCAGTGCTCGAACCTCTATCATTGACTTTACTGTGACCATGAAAGGTCTTGAAAATCAACTCTTGGGTAGAGTCATTCTAGCAGAGAAACAG
Seq A exon
GAATTAGAGAAAGAAAGAACAGATCTTATGGAAGATGTGACTTTAAACAGAAGGAGGATGAAAGAGCTAGAAGATAACCTTCTGTTCCGACTTACAAGCACTGAAGGTTCTCTGGCAGATGATGATAGTTTAATAATTGTACTGAGTAATACTAAAAAGACAGCTGAGGAGGTAACACAGAAACTACAAAATTCTGCTGAAACAGAGGTACAGATAAATTCAGCTCGTGAAGAATACAGACCTG
Seq C2 exon
TTGCAACTCGAGGTAGCATCTTATACTTCCTTATTACTGAGATGAGCATGGTCAATGTGATGTATCAGACTTCGCTTCGGCAGTTTTTGGGGCTTTTTGACAGCTCCCTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'70-74,'70-73,71-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.207 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(26.0=100)
A:
PF127812=AAA_9=PD(25.1=70.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACAAAGAAGTAGATGTGA
R:
TAGGGAGCTGTCAAAAAGCCC
Band lengths:
285-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]