BtaEX0011607 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59531466-59536519:+
Coord C1 exon
chr20:59531466-59531671
Coord A exon
chr20:59533625-59533828
Coord C2 exon
chr20:59536304-59536519
Length
204 bp
Sequences
Splice sites
3' ss Seq
CATTCTGTAACTTTTCCCAGGGT
3' ss Score
7.05
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGGTGAGCCAGGACCTGCTGGATGTGAGCGCTGTGGCCCAGTGGAAGCCCATGCTGTATGCCGTGGCTTTCCTGCACTCAGTGGTCCAGGAGAGGCGCAAGTTCGGGCCCCTGGGTTGGAACATCCCCTACGAATTTAACCAAGCCGATTTTAATGCCACAGTGCAGTTCATCCAGAACCACTTAGATGACATGGATCTCAAAAAG
Seq A exon
GGTGTCTCCTGGACCACTGTCCGCTACATGATAGGAGAGATACAGTATGGAGGCAGAGTCACCGATGACTATGACAAGAGACTATTGAACACACTTGCTAAAGTTTGGTTCAGTGAAAATATGTTTGGACCAGATTTCAGCTTTTACCAAGGCTACAATATTCCAAAATGCAGCACAGTTGATAACTATCTTCAGTATATCCAG
Seq C2 exon
GGCCTGCCCACTTACGACAGTCCCGAGGTGTTTGGGCTGCACCCCAATGCGGACATCACCTACCAGAGCAAGCTGGCCAAGGACGTGCTGGACACCATCCTGGGCATCCAGCCCAAAGACAGCTCTGGCGGAGGGGATGAGACCCGGGAGGCCATGGTGGCCCGGCTGGCTGATGACATGCTGGAGAAGCTGCCCCCGGACTATGGTCCTTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'75-75,'75-74,76-75
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.139
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.8=100)
A:
PF0302810=Dynein_heavy=FE(9.6=100)
C2:
PF0302810=Dynein_heavy=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGAGGCGCAAGTTCG
R:
CTCCAGCATGTCATCAGCCAG
Band lengths:
306-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development