GgaEX6020554 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76697967-76699945:+
Coord C1 exon
chr2:76697967-76698172
Coord A exon
chr2:76698990-76699193
Coord C2 exon
chr2:76699730-76699945
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTGTCTGATTGTAGGGG
3' ss Score
9.25
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTGTCAGCCAGGATTTGCTAGATGTCAGTGACATGGTGCAGTGGAAACCCATGCTGTATGCTGTAGCTTTTCTACACTCCACTACTCAAGAAAGACGCAAATTTGGATCTCTGGGCTGGAATATACCCTATGAGTTTAACCAAGCTGATTTCAATGCCACTGTGCAGTTCATTCAAAACCACTTGGATGGCACAGATTCCAAGAAG
Seq A exon
GGGATTTCCTGGAGTACTGTTTGTTACATGATAGGTGAAATCCAGTATGGTGGCCGTGTGACAGATGACTATGACAAAAGGCTGATGAACACCTTTGTTAAGGTCTGGTTCAGTGAAAAAATGTTCAGTCAAGAATTCTGCTTCTACAAAGGATATGGCATACCCAAATGTACTATGGTGGATCAATACCTTCAGTACATACAG
Seq C2 exon
AGTCTTCCTGCTTATGACACACCAGAGGTATTTGGTTTGCACCCCAATGCTGATATCACTTACGAAAGTAAACTTTCCAAAGACATATTGGACATCATCCTCAGTATTCAGCCAAAGGACAGCTCTGGTGGAGGAGGTGAAACCCGAGAGATAGTTGTAGCCAGACTAGCTGATGATATGCTGGAAAAGCTTCCTGCTGATTATGTACCATTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'76-83,'76-82,77-83=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.8=100)
A:
PF0302810=Dynein_heavy=FE(9.6=100)
C2:
PF0302810=Dynein_heavy=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGAAACCCATGCTGTA
R:
CTCCACCAGAGCTGTCCTTTG
Band lengths:
302-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]