MmuEX6053024 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28378038-28381288:+
Coord C1 exon
chr15:28378038-28378243
Coord A exon
chr15:28378905-28379108
Coord C2 exon
chr15:28381073-28381288
Length
204 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTCTGTGCTCGCAGGGT
3' ss Score
9.5
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GTGTGAGCCAGGACCTACTGGATGTGAGTGTGGGGGCCCAGTGGAAGCCCATGCTATATGCGGTGGCCTTCCTACACTCCACTGTCCAGGAGCGGCGCAAGTTCGGTCCTCTGGGGTGGAATATCCCTTACGAATTTAACCAAGCAGACTTCAATGCCACGGTGCAGTTCATTCAAAATCACCTAGATGATATGGATGTCAAGAAG
Seq A exon
GGTGTATCCTGGACCACTGTCCGCTACATGATAGGAGAGATTCAGTATGGAGGCAGAGTCACTGATGACTACGATAAGAGGTTGCTGAACACATTTGCAAAGGTTTGGTTCAGTGAAAACATGTTTGGACCAGATTTCACCTTTTACCAAGGATACAACATTCCAAAATGCAGTACAGTGGATGGCTATCTTCAGTACATCCAG
Seq C2 exon
AGCTTGCCTGCCTATGACAGCCCAGAGGTGTTTGGGCTCCACCCCAATGCTGACATTACTTACCAGAGCAAGCTGGCCAAGGATGTGCTGGACACTATCCTGGGCATCCAGCCCAAGGACAGCTCCGGTGGAGGGGACGAGACACGGGAGGCTGTGGTGGCCCGCCTGGCTGATGATATGCTAGAGAAGCTTCCAGAAGATTATAGTCCTTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'72-73,'72-72,73-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.8=100)
A:
PF0302810=Dynein_heavy=FE(9.6=100)
C2:
PF0302810=Dynein_heavy=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTCGGTCCTCTGGGGT
R:
TAGCATATCATCAGCCAGGCG
Band lengths:
292-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: