MmuEX6053024 @ mm10
Exon Skipping
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28448283-28451533:+
Coord C1 exon
chr15:28448283-28448488
Coord A exon
chr15:28449150-28449353
Coord C2 exon
chr15:28451318-28451533
Length
204 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTCTGTGCTCGCAGGGT
3' ss Score
9.5
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GTGTGAGCCAGGACCTACTGGATGTGAGTGTGGGGGCCCAGTGGAAGCCCATGCTATATGCGGTGGCCTTCCTACACTCCACTGTCCAGGAGCGGCGCAAGTTCGGTCCTCTGGGGTGGAATATCCCTTACGAATTTAACCAAGCAGACTTCAATGCCACGGTGCAGTTCATTCAAAATCACCTAGATGATATGGATGTCAAGAAG
Seq A exon
GGTGTATCCTGGACCACTGTCCGCTACATGATAGGAGAGATTCAGTATGGAGGCAGAGTCACTGATGACTACGATAAGAGGTTGCTGAACACATTTGCAAAGGTTTGGTTCAGTGAAAACATGTTTGGACCAGATTTCACCTTTTACCAAGGATACAACATTCCAAAATGCAGTACAGTGGATGGCTATCTTCAGTACATCCAG
Seq C2 exon
AGCTTGCCTGCCTATGACAGCCCAGAGGTGTTTGGGCTCCACCCCAATGCTGACATTACTTACCAGAGCAAGCTGGCCAAGGATGTGCTGGACACTATCCTGGGCATCCAGCCCAAGGACAGCTCCGGTGGAGGGGACGAGACACGGGAGGCTGTGGTGGCCCGCCTGGCTGATGATATGCTAGAGAAGCTTCCAGAAGATTATAGTCCTTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'70-82,'70-76,81-82=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(14.3=100)
A:
PF0302810=Dynein_heavy=FE(14.1=100)
C2:
PF0302810=Dynein_heavy=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTCGGTCCTCTGGGGT
R:
TAGCATATCATCAGCCAGGCG
Band lengths:
292-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types