BtaEX0011629 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31091444-31100375:+
Coord C1 exon
chr19:31091444-31091654
Coord A exon
chr19:31097422-31097549
Coord C2 exon
chr19:31100267-31100375
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACATCTGTGGTTCCTCTTAGGAC
3' ss Score
9.26
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GTGGTCCAGCTGGAGGAGCTCTTGGCAGTGCGGCACTCCGTGTTCGTGGTGGGCAGTGCAGGAACTGGCAAGTCGCAGGTGCTGAGGTCCTTGCACAAGACCTACCAGATCATGAAACGCCGCCCTGTCTGGACCGACCTCAACCCCAAAGCGGTCACCAACGATGAGCTCTTTGGCATCATCAATCCAGCCACACGAGAATGGAAGGACG
Seq A exon
GACTGTTCTCTTCTATCATGCGGGAGCTTGCCAACATCACCCATGATGGGCCCAAATGGATTTTACTGGATGGTGACATTGACCCGATGTGGATCGAGTCTCTGAACACTGTCATGGATGATAACAAG
Seq C2 exon
GTGCTGACCCTGGCAAGCAACGAGAGGATCCCTCTGAATCCAACCATGAGGCTTCTCTTTGAGATCAGCCACCTGCACACGGCCACGCCAGCCACTGTCTCCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'43-52,'43-51,44-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.3=81.7)
A:
PF077289=AAA_5=FE(30.7=100)
C2:
PF077289=AAA_5=PD(25.5=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCGTGTTCGTGGTGG
R:
GTGCAGGTGGCTGATCTCAAA
Band lengths:
256-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development