HsaEX6021144 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11650873-11659993:+
Coord C1 exon
chr17:11650873-11651083
Coord A exon
chr17:11656150-11656277
Coord C2 exon
chr17:11659885-11659993
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTGTCAGTGGTTCCTTTTAGGAT
3' ss Score
7.6
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTGGTCCAGCTGGAGGAGCTCCTGGCTGTGCGGCACTCTGTATTTGTGGTGGGTGGCGCTGGTACCGGCAAGTCACAGGTGCTGAGGTCCTTGCACAAGACCTATCAGATCATGAAACGGCGCCCCGTCTGGACTGACCTCAATCCCAAAGCAGTCACAAATGATGAGCTCTTTGGCATCATCAATCCAGCCACAGGAGAATGGAAGGATG
Seq A exon
GATTGTTCTCTTCCATCATGCGGGAGCTTGCCAACATCACCCATGATGGGCCCAAGTGGATTTTACTGGATGGCGACATAGATCCAATGTGGATTGAATCCCTGAATACTGTCATGGATGATAACAAG
Seq C2 exon
GTGCTGACATTGGCCAGCAATGAGAGGATTCCTCTGAACCCCACCATGAAGCTCCTCTTTGAGATCAGCCACCTGCGCACAGCCACTCCAGCAACTGTCTCTAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'31-33,'31-32,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.3=81.7)
A:
PF077289=AAA_5=FE(30.7=100)
C2:
PF077289=AAA_5=PD(25.5=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCACTCTGTATTTGTGGT
R:
GCAGGTGGCTGATCTCAAAGA
Band lengths:
258-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)