GgaEX6015776 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1077484-1080640:+
Coord C1 exon
chr18:1077484-1077694
Coord A exon
chr18:1079903-1080030
Coord C2 exon
chr18:1080532-1080640
Length
128 bp
Sequences
Splice sites
3' ss Seq
TATTCATGTCATCTTCCCAGGGC
3' ss Score
8.08
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTGGTGCAACTGGAGGAGCTGCTGACAGTACGGCACTCTGTCTTTGTGGTGGGTAATGCAGGCACGGGCAAGTCGCAGGTGATGAGGTCTCTGAATAGGACTTACCAGATAATGAAGCGACGGCCTGTCTGGACAGACCTCAACCCCAAAGCAGTCACCAATGATGAGCTTTTTGGCATCATAAACCCAGCAACGAGAGAATGGAAGGACG
Seq A exon
GGCTGTTTTCATCAATCATGAGAGAGCTGGCCAACATCACACACGATGGCCCCAAGTGGATGGTACTAGATGGAGATATTGATCCGATGTGGATTGAGTCTCTTAATACAGTGATGGATGATAATAAG
Seq C2 exon
GTGCTGACCCTGGCAAGCAATGAGAGAATCCCCCTGAAGCCAACAATGAGATTGGTGTTTGAGATCAGCCACTTGCGTACAGCCACCCCCGCAACTGTGTCCAGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.3=81.7)
A:
PF077289=AAA_5=FE(30.7=100)
C2:
PF077289=AAA_5=PD(25.5=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGAGCTGCTGACAGTA
R:
TTGGCTTCAGGGGGATTCTCT
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]