BtaEX0011630 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31101531-31112818:+
Coord C1 exon
chr19:31101531-31101678
Coord A exon
chr19:31102336-31102510
Coord C2 exon
chr19:31112645-31112818
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTGGATCTCTCTTTCTTCAGATT
3' ss Score
9.82
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGATCCTGTACATTAACCCGGCAGACCTGGGCTGGAATCCTCCTGTGAGCAGCTGGATCGACAGGAGAGAGATCCAGACAGAGAGAGCCAACCTAACCATCCTATTTGACAAGTACCTTCCGACCTGCTTAGATGCGCTCAGAACAAG
Seq A exon
ATTTAAGAAGATAATTCCAGTCCCAGAGCAGAGCACAGTTCAGATGCTGTGCCACCTTCTTGAGTGTCTGCTGACCGAGGAGGACATCCCCGCAGACTGCCCCAAAGACACCTACGAGCTTTACTTTGTGTTTGCTGCCATCTGGGCTTTTGGTGGAGCACTGGTCCACGACCAG
Seq C2 exon
CTCGTGGACCACCGGGCAGAGTTCAGCAAATGGTGGCTCAGTGAGTTCAAGACCATCAAGTTTCCCTCCCAAGGAACCATCTTTGACTATTACATAGACCCAGAGACCAAGAAATTCGAGCCTTGGTCCAGGCTCATCCCGCAGTTTGAATTTGACCCTGAGACACCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'46-55,'46-54,47-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGATCGACAGGAGAGA
R:
ATTCAAACTGCGGGATGAGCC
Band lengths:
250-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development