RnoEX6047736 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52531483-52544910:-
Coord C1 exon
chr10:52544763-52544910
Coord A exon
chr10:52537009-52537183
Coord C2 exon
chr10:52531483-52531656
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTCCCCGCCCCCCTCTGCAGATT
3' ss Score
11.57
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGATCCTGTACATAAACCCTGCAGACCTGGGATGGAACCCTCCAGTAAACAGCTGGATAGACCAAAGAGAGGTCCAAACTGAGAGAGCCAACCTGACCATCTTGTTTGACAAATACCTTCCTACCTGCTTGGACACCCTCAGAACCAG
Seq A exon
ATTTAAGAAGATAATCCCAGTCCCAGAGCAGAGCATGATCCAGATGCTGTGCTACCTCCTTGAGTGCCTCCTGACAAAGGAGGCTGTCCCTGCAGACTGCCCCAAGGAAATCTATGAACTCTATTTTGTGTTTGCTGCCATCTGGGCATTTGGCAGTTCCATGGTCCAAGATCAG
Seq C2 exon
CTTGTAGACTACCGGGCAGAGTTCAGCAAATGGTGGCTGACTGAGTTCAAAACGGTCAAATTTCCTTCCCAAGGAACTGTCTTTGACTACTACATAGACCAAGAGACCAAGAAATTTGAGCCTTGGGGCAAGCTCATCCCCCAGTTTGAATTTGACCCTGAGATGCCTTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'47-49,'47-46,49-49=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCAAACTGAGAGAGCCA
R:
GCAAAGGCATCTCAGGGTCAA
Band lengths:
251-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]