HsaEX6021141 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11757545-11768626:+
Coord C1 exon
chr17:11757545-11757692
Coord A exon
chr17:11763440-11763614
Coord C2 exon
chr17:11768453-11768626
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCTCGGGTCTCTCTTTGCAGGTT
3' ss Score
11.67
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGATCTTGTACATCAACCCGGCAGACTTGGGATGGAACCCTCCAGTGAGCAGCTGGATTGAGAAGAGGGAAATCCAGACAGAGAGAGCCAACTTAACCATTTTGTTCGACAAGTATCTTCCAACCTGCCTAGACACACTCAGAACCAG
Seq A exon
GTTTAAGAAGATCATTCCCATCCCAGAGCAGAGCATGGTTCAGATGGTGTGTCACCTTCTGGAATGTCTCCTGACCACGGAGGACATCCCTGCAGACTGCCCTAAGGAAATTTATGAGCATTATTTTGTGTTTGCTGCCATCTGGGCTTTCGGCGGAGCAATGGTCCAAGATCAG
Seq C2 exon
CTTGTGGACTACCGGGCAGAGTTCAGCAAATGGTGGCTGACTGAGTTCAAAACAGTCAAGTTTCCTTCCCAAGGAACCATCTTTGACTATTACATCGACCCAGAGACCAAGAAATTCGAGCCTTGGTCCAAGCTCGTCCCCCAGTTCGAATTTGACCCCGAGATGCCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'65-61,'65-60,66-61=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGTGAGCAGCTGGATTG
R:
GCTTGGACCAAGGCTCGAATT
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains