BtaEX0011898 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018579 | DOK1
Description
Bos taurus docking protein 1, 62kDa (downstream of tyrosine kinase 1) (DOK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024543]
Coordinates
chr11:10069708-10070654:-
Coord C1 exon
chr11:10070355-10070654
Coord A exon
chr11:10070117-10070210
Coord C2 exon
chr11:10069708-10069892
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACTCCTTCTCCTTACCCCAGAAA
3' ss Score
8.77
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
AGATGGAGGAAGACCTGGGCGGTTCTCTACCCGGCCAGTCCCCACGGTGTCGCGCGGCTCGAGTTCTTTGACCACAAGGGGTCTAGCTCTGGAGGTGGCCGAGGGAGCTCGCGCCGCCTGGACTGCAAGGTGATCCGTCTGGCAGAGTGTGTGAGCGTGGCCCCCGTGGCAGTGGAGAGCCCCCCTGAGCCTGGCGCCGCAGCTTTTCGCCTGGATACCGCACAGCGATCCCACTTGCTGGCGGCCGACGCGCCGTCCAGTGCAGCCTGGGTGCAAACGCTGTGCCAAAACGCCTTTCCG
Seq A exon
AAAGGCAGCTGGGCCCTGGCACCTGCCGAGAACCCACCCAAGCTTTCCGCCCTGGAGATGCTGGAGAACTCGCTGTATAGCCCCTCCTGGGAAG
Seq C2 exon
GATCCCAGTTCTGGGTAACGGTGCAGAAGACTGAGGCCGCCGAGCGCTGTGGCCTGCATGGCTCCTATGTGCTGAGAGTGGAGGCAGAGAGGCTGACTCTTCTGGCCCCGGGGGCCCAGAGGCAGATATTGGAGCCACTTCTTTTCTGGCCCTACACTCTGTTGCGTCGCTATGGCCGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018579_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(84.3=97.0)
A:
PF0217412=IRS=PU(1.0=3.1)
C2:
PF0217412=IRS=FE(58.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTTTCGCCTGGATACCG
R:
CTCAGCACATAGGAGCCATGC
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development