DreEX0028054 @ danRer10
Exon Skipping
Gene
ENSDARG00000099177 | dok1b
Description
docking protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2063]
Coordinates
chr7:58910236-58938427:+
Coord C1 exon
chr7:58910236-58910539
Coord A exon
chr7:58935593-58935683
Coord C2 exon
chr7:58938255-58938427
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTTATTGCTTCAAGGGA
3' ss Score
6.05
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGCAATACGGGCAACGTCTCAAAACGCAGGACCAGCAGCATAAAAACACTATTTTCTAACACTGCGCAGTCTCTGTCCTTACAATCATTTAACACTTAGAATAATCTTAATGTTTTCCGTCGAAACGCACAAGAGCCAAAAGTTTGTCAAGCGGAAGTTCGCACTGTAGGAAATCGGAAAAACTCAAAAGAGCGAGAAATATATTATTGTCGTTTATCTTGCTGTTCAGCTGAAAATATTTATAAAAATGGACAGTCATGTTAAAGAGGGACAACTATACGTCCAGCATCAGAAGTTTGGAAAG
Seq A exon
GGAGGAAGTGGTTCACTTGGTAGTTCTGACTCAAATGGACAGCAGGAGCTTCAAATGGCAGAAAATCTCATTTATTACTCCAGGGAAGAAG
Seq C2 exon
TTAATGAATTTTTGGTGACTGTTCAAAGGACTGAAGCATCAGAGCGCTGTGGTCTGTCTGGTAACTACTGGCTCAGGGCTAACATGGACAACCTTATCTTGAAGGATCCCAAGACTAAAAAGGATTTACTTATATGGCCCTACAAGCTTCTCCGTCGCTATGGAAGAGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099177-'0-2,'0-1,2-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.3=78.9)
A:
PF0217412=IRS=PU(1.0=3.2)
C2:
PF0217412=IRS=FE(57.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCAGCATCAGAAGTTTGGA
R:
CGGAGAAGCTTGTAGGGCCAT
Band lengths:
179-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]