RnoEX6014001 @ rn6
Exon Skipping
Gene
ENSRNOG00000007412 | Dok1
Description
docking protein 1 [Source:RGD Symbol;Acc:1309499]
Coordinates
chr4:113865466-113866299:-
Coord C1 exon
chr4:113866000-113866299
Coord A exon
chr4:113865767-113865860
Coord C2 exon
chr4:113865466-113865650
Length
94 bp
Sequences
Splice sites
3' ss Seq
CGATGTTCTCTTTTCTGCAGAAA
3' ss Score
10.24
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
AGGTGGAAGAAAACTTGGGCTGTGCTTTACCCAGCCAGCCCTCACGGCGTGGCGCGGCTGGAATTCTTTGATCACAAGGGGTCGAGCTCTGGAGGGGGTCGAGGCGGCTCTCGCCGTCTAGACTGCAAGATGATACGCCTGGCTGAATGTGTGAGCGTGGTGCCTGTGACTGTGGAGAGTCCCCCTGAGCCCGGCGCCTCTGCCTTCCGCCTGGACACCGCACAACGCTCGCACCTGCTTGCAGCGGACGCCGCATCCAGCACTGCCTGGGTGCAGATTTTATGCAGAACCGCTTTTCCG
Seq A exon
AAAGGCGGCTGGGCTTTGGCTCAGACGGAGAACCCACCTAAGTTTTCTGCCCTGGAGATGCTGGAGAATTCGCTGTACAGCCCCACCTGGGAAG
Seq C2 exon
GATCCCAATTCTGGGTAACCTCGCAGAAGACCGAGGCTTCTGAACGCTGCGGCTTGCAAGGCTCCTACGTACTGAGGGTAGAAGCTGAGAAGCTGACCCTTCTGACTTTGGGTGCACAGAGTCAAATCCTGGAGCCGCTCCTTTTCTGGCCCTACACTCTGTTGCGACGCTATGGCCGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007412-'1-5,'1-3,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(84.3=97.0)
A:
PF0217412=IRS=PU(1.0=3.1)
C2:
PF0217412=IRS=FE(58.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCCTGGGTGCAGATTTT
R:
CGGCTCCAGGATTTGACTCTG
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]