BtaEX0011980 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005235 | DPP10
Description
Bos taurus dipeptidyl-peptidase 10 (non-functional) (DPP10), mRNA. [Source:RefSeq mRNA;Acc:NM_001078070]
Coordinates
chr2:68002331-68028856:+
Coord C1 exon
chr2:68002331-68002454
Coord A exon
chr2:68018086-68018124
Coord C2 exon
chr2:68028749-68028856
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATTTAATTGTTCTGTTTCAGAAA
3' ss Score
9.44
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGAATACTATATCACTATGGTTAAATGGGTAAGCAACACCAAGACGGTGGTCAGATGGTTGAATCGACCTCAGAACATCTCCATCCTCACAGTCTGTGAGACCACTACTGGTGCTTGTAGCAGA
Seq A exon
AAATATGAAATGACATCAGATACCTGGCTGTCTAAACAG
Seq C2 exon
AATGAGGAGCCCGTGTTTTCTAGAGATGGTAGCAAATTCTTCATGACAGTTCCTGTGAAGCAAGGGGGCCGTGGAGAGTTTCACCACATAGCTATGTTCCTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005235_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(11.6=100)
A:
PF0093016=DPPIV_N=FE(3.4=100)
C2:
PF0093016=DPPIV_N=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTAAGCAACACCAAGACG
R:
AGAAAACACGGGCTCCTCATT
Band lengths:
120-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development