RnoEX0029623 @ rn6
Exon Skipping
Gene
ENSRNOG00000002595 | Dpp10
Description
dipeptidylpeptidase 10 [Source:RGD Symbol;Acc:1306427]
Coordinates
chr13:39510561-39554786:-
Coord C1 exon
chr13:39554663-39554786
Coord A exon
chr13:39514242-39514280
Coord C2 exon
chr13:39510561-39510668
Length
39 bp
Sequences
Splice sites
3' ss Seq
AGGCAATTGTTCTTTTTCAGAAA
3' ss Score
6.89
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGAATATTACATCACCATGGTTAAATGGGTGAGCAACACCAGGACAGTGGTCAGATGGTTGAATCGTCCTCAGAACATCTCCATCCTCACAGTCTGTGAGTCTACCACCGGGGCATGCAGTAGG
Seq A exon
AAATACGAAATGACATCTGACACCTGGATCTCTAAACAG
Seq C2 exon
AACGAGGAGCCAGTGTTTTCTAGAGATGGAAGCAAGTTCTTCATGACTGTTCCTGTCAAACAAGGTGGAAGAGGAGAATTCCACCACATAGCTATGTTCCTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002595-'8-16,'8-15,9-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(11.4=100)
A:
PF0093016=DPPIV_N=FE(3.3=100)
C2:
PF0093016=DPPIV_N=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCAACACCAGGACAGTG
R:
AGAAAACACTGGCTCCTCGTT
Band lengths:
117-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]