HsaEX0020819 @ hg19
Exon Skipping
Gene
ENSG00000175497 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:20823]
Coordinates
chr2:116510750-116525980:+
Coord C1 exon
chr2:116510750-116510873
Coord A exon
chr2:116520148-116520186
Coord C2 exon
chr2:116525873-116525980
Length
39 bp
Sequences
Splice sites
3' ss Seq
AGTTAATTGTTTTGTTTCAGAAA
3' ss Score
7.5
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGAATACTATATCACTATGGTTAAATGGGTAAGCAATACCAAGACTGTGGTAAGATGGTTAAACCGAGCTCAGAACATCTCCATCCTCACAGTCTGTGAGACCACTACAGGTGCTTGTAGTAAA
Seq A exon
AAATATGAGATGACATCAGATACGTGGCTCTCTCAGCAG
Seq C2 exon
AATGAGGAGCCCGTGTTTTCTAGAGACGGCAGCAAATTCTTTATGACAGTGCCTGTTAAGCAAGGGGGACGTGGAGAATTTCACCACGTAGCTATGTTCCTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175497-'28-28,'28-27,29-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(11.1=100)
A:
PF0093016=DPPIV_N=FE(3.3=100)
C2:
PF0093016=DPPIV_N=FE(9.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGACCACTACAGGTGCT
R:
GTGAAATTCTCCACGTCCCCC
Band lengths:
114-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)