MmuEX0015587 @ mm10
Exon Skipping
Gene
ENSMUSG00000036815 | Dpp10
Description
dipeptidylpeptidase 10 [Source:MGI Symbol;Acc:MGI:2442409]
Coordinates
chr1:123398521-123411834:-
Coord C1 exon
chr1:123411711-123411834
Coord A exon
chr1:123402833-123402871
Coord C2 exon
chr1:123398521-123398628
Length
39 bp
Sequences
Splice sites
3' ss Seq
AGGCAATTGTTCTGTTTCAGAAA
3' ss Score
6.65
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGAATATTACATCACCATGGTTAAATGGGTGAGCAACACGAGGACAGTGGTCAGGTGGTTGAATCGGCCTCAGAACATCTCCATCCTCACACTCTGTGAATCTACCACCGGGGCATGCAGCAGG
Seq A exon
AAATATGAGATGACGTCCGACACCTGGCTCTCTAAACAG
Seq C2 exon
AACGAGGAGCCAGTGTTTTCCAGAGATGGAAGCAAGTTCTTCATGACTGTTCCTGTTAAACAAGGTGGAAGAGGAGAATTCCACCACATAGCTATGTTCCTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036815-'24-37,'24-36,25-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(11.1=100)
A:
PF0093016=DPPIV_N=FE(3.3=100)
C2:
PF0093016=DPPIV_N=FE(9.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACGAGGACAGTGGTCAG
R:
GGAAAACACTGGCTCCTCGTT
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types