BtaEX0011983 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015330 | DPP4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MU57]
Coordinates
chr2:34552577-34555988:+
Coord C1 exon
chr2:34552577-34552771
Coord A exon
chr2:34555218-34555272
Coord C2 exon
chr2:34555889-34555988
Length
55 bp
Sequences
Splice sites
3' ss Seq
ACTTCCTCCATGCATTTTAGACA
3' ss Score
7.82
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATATGCAGGCCCCTGTAGTCAAAAAGCGGATGCTATCTTCAGACTCAACTGGGCTACTTACCTTGCAAGCACAGAAAACATTATAGTAGCTAGCTTTGATGGCAGAGGAAGTGGTTACCAAGGAGATAAGATCATGCACGCAATCAACAGAAGATTGGGAACATTTGAAGTTGAAGATCAAATTGAAGCAACCAG
Seq A exon
ACAGTTTTCAAAAATGGGATTTGTGGACGACAAACGGATTGCAATTTGGGGCTGG
Seq C2 exon
TCATACGGAGGGTACGTAACCTCAATGGTGCTGGGAGCAGGAAGTGGTGTGTTCAAGTGTGGAATAGCCGTGGCGCCTGTATCCAAGTGGGAGTACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015330-'33-35,'33-34,36-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=PU(25.1=78.8)
A:
PF0032616=Peptidase_S9=FE(12.2=100)
C2:
PF0032616=Peptidase_S9=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGAAGTGGTTACCAAGG
R:
GAACACACCACTTCCTGCTCC
Band lengths:
148-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development