MmuEX6101608 @ mm10
Exon Skipping
Gene
ENSMUSG00000035000 | Dpp4
Description
dipeptidylpeptidase 4 [Source:MGI Symbol;Acc:MGI:94919]
Coordinates
chr2:62347818-62352316:-
Coord C1 exon
chr2:62352122-62352316
Coord A exon
chr2:62348501-62348555
Coord C2 exon
chr2:62347818-62347917
Length
55 bp
Sequences
Splice sites
3' ss Seq
ACTTCTTTCTTGTGTTTTAGGCA
3' ss Score
12.37
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATATGCAGGTCCCTGTAGTCAAAAAGCAGATGCTTCCTTCAGACTGAACTGGGCCACTTACCTTGCAAGTACAGAAAACATCATAGTAGCTAGCTTTGACGGCAGAGGAAGTGGTTACCAAGGAGATAAGATCATGCATGCAATCAACAGAAGATTGGGAACACTGGAAGTTGAAGATCAAATTGAAGCAGCCAG
Seq A exon
GCAATTTGTAAAAATGGGATTTGTGGATAGCAAGCGAGTTGCAATTTGGGGCTGG
Seq C2 exon
TCATATGGAGGGTATGTAACCTCAATGGTCCTGGGATCGGGAAGTGGCGTGTTCAAGTGCGGAATAGCTGTGGCACCTGTGTCACGGTGGGAGTACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035000-'41-33,'41-32,43-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=PU(25.7=81.8)
A:
PF0032616=Peptidase_S9=FE(16.5=100)
C2:
PF0032616=Peptidase_S9=FE(15.7=100)
Main Skipping Isoform:
ENSMUST00000047812fB9086
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGGCAGAGGAAGTGGTTA
R:
CTTCCCGATCCCAGGACCATT
Band lengths:
143-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types