DreEX6038682 @ danRer10
Exon Skipping
Gene
ENSDARG00000078468 | fap
Description
fibroblast activation protein, alpha [Source:ZFIN;Acc:ZDB-GENE-081104-439]
Coordinates
chr9:51723482-51726151:+
Coord C1 exon
chr9:51723482-51723676
Coord A exon
chr9:51723946-51724000
Coord C2 exon
chr9:51726052-51726151
Length
55 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGCGTTTCATTTCAGAAA
3' ss Score
9.52
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTATGGTGGTCCAGCCAGCCAGAACATAGACTATGTGTTTCGCTTGGAGTGGGCGACGTACCTGTGCAGCACCGAGAGGATCATCGTGGCCAGTTTTGACGGCAGGGGAAGTGGTTTCCAGGGGGATGAAATAATGCACGCCATCTACGAGCGGCTGGGGACGTACGAGGTGGAAGATCAGATCACGGCCGTGAG
Seq A exon
AAAGTTCATTGAAATGGGTTTCATTGACAAGGACAGAATTGCGATGTGGGGTTGG
Seq C2 exon
TCCTATGGCGGTTATGTGACGTCTATGGCTCTGGGATCAGGAAGTGGGCTTTTCAAATGTGGAATTGCTGTGGCTCCTGTTGCAAAGTGGGAATATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078468-'20-23,'20-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=PU(25.4=78.8)
A:
PF0032616=Peptidase_S9=FE(8.8=100)
C2:
PF0032616=Peptidase_S9=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGCACGCCATCTACGAGC
R:
AACAGGAGCCACAGCAATTCC
Band lengths:
145-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]